Phylogenetic Trees of Aecial-Stage Rust Fungus, Puccinia paederiae (Dietel) Gorlenko Causing Gall on Paederia linearis Hook f.

Wuttiwat JITJAK; Niwat SANOAMUANG

doi:10.48048/wjst.2018.2460

Authors

Wuttiwat JITJAK International Collage, Khon Kaen University, Khon Kaen 40002
Niwat SANOAMUANG Division of Entomology and Plant Pathology, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002

DOI:

https://doi.org/10.48048/wjst.2018.2460

Keywords:

Aecium, basidiomycetes, galling rust, pucciniomycetes, skunk vine

Abstract

A rust fungus, Puccinia paederiae (Dietel) Gorlenko causing galls on the stem of the skunk vine (Paederia linearis Hook. f. var. linealis and P. linealis var. palida (Craib) Puff) was collected for phylogenetic study as no molecular data was exclusively available for this fungus. Three regions of ribosomal DNA sequences, small subunit (SSU), large subunit (LSU) and internal transcribed spacer region 1 (ITS1) were employed. The results of maximum parsimony and Bayesian methods suggested that among the trees with these sequences, this fungus was nested in Pucciniaceae clades and Puccinia species with supportive statistical values. This is the first report on the phylogenetic analysis using multiple genes of the rust, P. paederiae.

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References

NO Aquilar. Paederia foetida L. Record from Proseabase. In: JLCH van Valkenburg and N Bunyapraphatsara (eds.). PROSEA (Plant Resources of South-East Asia) Foundation, Bogor, Indonesia, Available at: http://www.proseanet.org, accessed February 2016.

Royal Forest Department, Office of Community Forest Management. Local Wisdom Study on Management Techniques of Products from Community Forest: Making of Snack from Skunkvine (in Thai), Available at: http://www.forest.go.th, accessed February 2016.

P Sudta, C Sabyjai and K Wanirat. Phytochemical analysis, in vitro antioxidant and cytotoxicity activity of extracts of Paederia linearis hook. f. root. Sci. J. Phetchaburi Rajabhat Univ. 2013; 10, 5-18.

K Ingkaninan, P Temkitthawon, K Chuenchom, T Yuyaem and W Thongnoi. Screening for acetylcholinesterase inhibitory activity in plants used in Thai traditional rejuvenating and neurotonic remedies. J. Ethnopharmacol. 2003; 89, 261-4.

PK Mukherjee, V Kumar, M Mal and PJ Houghton. Acetylcholinesterase inhibitors from plants. Phytomedicine 2007; 14, 289-300.

MP Ko, MM Ramadan and NJ Reimer. Fungi pathogenic on Paederia spp. from Northern Thailand as potential biological control agents for Skunkvine Paederia foetida (Rubiaceae). Session 4 target and agent selection. In: Proceedings of XIII International Symposium on Biological Control of Weeds, Waikoloa, Hawaii, USA, 2011, p. 193.

GB Cummins. The Rust Fungi of Cereals, Grasses and Bamboos. Springer, Berlin, 1971.

FL Stevens and VB. Mendiola. Aecioid short cycle rusts of the Philippine Islands. Philipp. Agric. 1931; 20, 3-17.

P Dietel. Einige neue Uredineen. Hedwigia 1897; 36, 297-9.

TJ White, T Bruns, S Lee and J Taylor. Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics. In: MA Innis, DH Gelfand, JJ Sninsky and TJ White (eds.). PCR Protocols: A Guide to Methods and Applications, Academic Press, San Diego, 1990, p. 315-22.

K O’Donnell. Fusarium and Its Near Relatives. In: DR Reynolds and JW Taylor (eds.). The Fungal Holomorph: Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics, CAB International, Wallingford, 1993, p. 225-33.

CW Barnes and LJ Szabo. Detection and identification of four common rust pathogens of cereals and grasses using real-time polymerase chain reaction. Phytopathology 2007; 97, 717-27.

K Tamura, G Stecher, D Peterson, A Filipski and S Kumar. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Phylogenet. Evol. 2013; 30, 2725-9.

J Felsenstein. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 1985; 39, 783-91.

JP Huelsenbeck and B Rannala. Frequentist properties of bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst. Biol. 2004; 53, 904-13.

A Rambaut. 2009. FigTree v1.4: Tree Figure Drawing Tool, Available at: http://tree.bio.ed.ac.uk/software/figtree, accessed February 2016.

PM Kirk. 2016. Species Fungorum (version Feb 2014). In: Y Roskov, L Abucay, T Orrell, D Nicolson, T Kunze, C Flann, N Bailly, P Kirk, T Bourgoin, RE De Walt, W Decock and A De Wever (eds.). Species 2000 & ITIS Catalogue of Life, Available at: www.catalogueoflife.org/col, accessed February 2016.

DM Hillis and MT Dixon. Ribosomal DNA: Molecular evolution and phylogenetic inference. Quart. Rev. Biol. 1991; 66, 411-53.

GF Richard, A Kerrest and B Dujon. Comparative genomics and molecular dynamics of DNA repeats in eukaryotes. Microbiol. Mol. Biol. Rev. 2008; 72, 686-727.

NA Eckardt. Identification of rust fungi Avirulence Elicitors. Plant Cell. 2006; 18, 1-3.

MM Kulik and PD Dery. A bright-field and scanning electron microscopic study of the development of Puccinia zoysiae on Zoysia species and Paederia scandens. Mycologia 1992; 84, 87-93.

L Shangwu. Flora Reipublicae Popularis Sinicae. Science Press, Beijing, 1987.

V Robert, G Stegehuis and J Stalpers. The MycoBank Engine and Related Databases [MB#322060]. Available at: http://www.mycobank.org, accessed January 2016.